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I added a FrontPage theme to my Top Level Domain. Now all of my virtual host(s) have the same theme. How can I prevent this? | Advanced Internet Technologies

Since subwebs are not allowed on linux servers FrontPage treats virtual hosts directories as part of the Top Level Domain. Hence any changes are trickled down to the virtual host(s).

To prevent this you must setup your Top Level Domain as a virtual host and install the extensions within this directory as well as your website. This will prevent FP from modifying any additional files/directories.